Pierre-Louis Bazin
Pierre-Louis Bazin
Research Associate
Neuroradiology Division
Department of Radiology and Radiological Science
Johns Hopkins University

Member
Laboratory of Medical Image Computing

Education

Contact

Pierre-Louis Bazin
Neuroradiology Division, Phipps B100
Radiology and Radiological Science
Johns Hopkins University
600 North Wolfe Street
Baltimore, MD 21287
USA

Phone: 410-955-3309
FAX: 410-614-1577
E-mail: pbazin1@jhmi.edu
Personal Homepage

Research

Publications

Journal Articles and Book Chapters

  1. N. Shiee, P.-L. Bazin, A. Ozturk, P.A. Calabresi, D.S. Reich, D.L. Pham, "A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions" NeuroImage, in press.

  2. B.A. Landman, P-L Bazin, and J.L. Prince, "Estimation and Application of Spatially Variable Noise Fields in Diffusion Tensor Imaging", Magnetic Resonance Imaging, 2009.

  3. B.A. Landman, P-L Bazin, S.A. Smith, and J.L. Prince, "Robust Estimation of Spatially Variable Noise Fields", Magnetic Resonance in Medicine, 2009.

  4. Pham DL, Bazin P-L, "Unsupervised Tissue Classification," Handbook of Medical Image Processing and Analysis, 2nd Edition, Isaac Bankman (ed.), Elsevier, 2009.

  5. P.-L. Bazin, D.L. Pham, "Homeomorphic Brain Image Segmentation with topological and Statistical Atlases", Medical Image Analysis special issue on MICCAI 2007, 12(5):616-625, 2008.
  6. P.-L. Bazin, D.L. Pham, "Topology Correction of Segmented Medical Images using a Fast Marching Algorithm," Computer Methods and Programs in Biomedicine,  88:2, 182-190, 2007.

  7. P.-L. Bazin, J.L. Cuzzocreo, M.A. Yassa, W. Gandler, M.J. McAuliffe, S.S. Bassett, D.L. Pham, "Volumetric neuroimage analysis extensions for the MIPAV software package," Journal of Neuroscience Methods 165: 111-121, 2007.

    8.
  8. P.-L. Bazin and D.L.Pham, "Topology-Preserving Tissue Classification of Magnetic Resonance Brain Images", IEEE Transactions on Medical Imaging, special issue on Computational Neuroanatomy, 26:4, April 2007.
  9. P.-L. Bazin and J.M. Vezien, "Integration of Geometric Elements, Euclidean Relations and Motion Curves for Parametric Shape and Motion Estimation", IEEE Transactions on Pattern Analysis and Machine Intelligence, vol 27, 12, december 2005 (pdf).
  10. P.-L. Bazin and M. Boutin, "Structure from Motion: a new look from the point of view of invariant theory", SIAM Journal on Applied Mathematics, vol 64, 4, 2004 (pdf).
  11. P.-L. Bazin and J. M. Vezien, "Shape and Motion Estimation from Geometry and Motion Modeling", IEICE Transactions, special issue on Machine Vision Applications, december 2001 (pdf).

Conference Articles

  1. Bazin P-L, Bogovic J, Reich DS, Prince JL, Pham DL, “Efficient MRF Segmentation of DTI White Matter Tracts using an Overlapping Fiber Model”, Proceedings of the MICCAI workshop of Diffusion Modeling and the Fiber Cup, 2009.
  2. Bazin P-L, Bogovic J, Reich DS, Prince JL, Pham DL, “Belief Propagation Based Segmentation of White Matter Tracts in DTI”, Proceedings of MICCAI, 2009.
  3. N. Shiee, P-L. Bazin, D.S. Reich, D.L. Pham, "Automated Cortical Reconstruction of Brains with Multiple Sclerosis", Sixth IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, Massachusetts, June 28 - July 1, 2009.

  4. Snehashis Roy, Aaron Carass, Pierre-Louis Bazin, Jerry L. Prince, "A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images", Sixth IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, Massachusetts, June 28 - July 1, 2009.

  5. N. Shiee, P.-L. Bazin, D.L. Pham, "Multiple Sclerosis Lesion Segmentation Using Statistical and Topological Atlases," presented at the 11th International Conference on Medical Image Computing and Computer Assisted Intervention Workshop on 3D Segmentation in the Clinic: A Grand Challenge, in New York, NY, Sept 6-10, published in the Midas Journal, 2008.
  6. Shiee N, Bazin P-L, Cuzzocreo JL, Reich DS, Calabresi PA, Pham DL, “Topologically Constrained Segmentation of Brain Images with Multiple Sclerosis Lesions”, Proceedings of MICCAI workshop on Medical Image Analysis on Multiple Sclerosis, 2008.
  7. B.A. Landman, P-L. Bazin, and J.L. Prince, "Tensor Interpolation by Concise Local Estimation of Anisotropy and Rotation", Proceedings of the Workshop on Computational Diffusion MRI at the 11th International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.

  8. X. Fan, P.-L. Bazin, J. Bogovic, Y. Bai and J.L. Prince, “A Multiple Geometric Deformable Model Framework for Homeomorphic 3D Medical Image Segmentation”, Proceedings of MMBIA, 2008.

  9. X. Fan, P.-L. Bazin and J.L. Prince, “A Multicompartment Segmentation Framework With Homeomorphic Level Sets”, Proceedings of CVPR, 2008.
  10. P.-L. Bazin and D. L. Pham, "Statistical and Topological Atlas Based Brain Image Segmentation", Proceedings of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention, in Brisbane, AU, October 2007.

  11. B.A. Landman, P.-L. Bazin, J.L. Prince, "Diffusion Tensor Estimation by Maximizing Rician Likelihood", Proceedings of the IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, in Rio de Janeiro, BR, October 2007.
  12. P.-L. Bazin, L.M. Ellingsen and D.L. Pham, "Digital Homeomorphisms in Deformable Registration", Proceedings of the 20th International Conference on Information Processing in Medical Imaging, in Kerkrade, NL, July 2007.

  13. A. Carass, M.B. Wheeler, J.L. Cuzzocreo, P.-L. Bazin, S.S. Bassett and J.L. Prince, "A Joint Registration and Segmentation Approach to Skull Stripping", Proceedings of the 4th IEEE International Symposium on Biomedical Imaging: Macro to Nano, in Arlington, VA, Apr. 12-15, 2007.

  14. P.-L. Bazin and D. L. Pham, "TOADS: Topology-preserving, Anatomy-driven Segmentation", Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, pp. 327-330, in Arlington, VA, Apr. 6-9, 2006.

  15. D. L. Pham and P.-L. Bazin, "Simultaneous Registration and Tissue Classification using Clustering Algorithms", Proceedings of the The 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, pp. 650-653, in Arlington, VA, Apr. 6-9, 2006.
  16. P. Anbazhagan, A. Carass, P.-L. Bazin and J.L. Prince, "Automatic Estimation of Midsagittal Plane and AC-PC Alignment based on Nonrigid Registration", Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, in Arlington, VA, Apr. 6-9, 2006.
  17. P.-L. Bazin and D. L. Pham, "Topology Correction using Fast Marching Methods and its Application to Brain Segmentation", Proceedings of the 8th International Conference on Medical Image Computing and Computer Assisted Intervention, LNCS 3750, pp. 484-491, in Palm Springs, CA, October 26-29, 2005 (pdf).
  18. P.-L. Bazin and D. L. Pham, "Topology Preserving Tissue Classification with Fast Marching and Topology Templates", Proceedings of the 19th International Conference on Information Processing in Medical Imaging, LNCS 3565, pp. 234-245, in Glenwood Springs, CO, July 11-15, 2005 (pdf).
  19. P.-L. Bazin, M. McAuliffe, W. Gandler and D. L. Pham, "Free Software Tools for Atlas-based Volumetric Neuroimage Analysis", Proceedings of SPIE Medical Imaging 2005: Image Processing vol. 5747, pp. 1824-1833, in San Diego, CA, Feb. 12-17, 2005 (pdf).
  20. P.-L. Bazin and D.L. Pham, "Topology Smoothing for Segmentation and Surface Reconstruction", Proceedings of the 7th International Conference on Medical Image Computing and Computer Assisted Intervention, LNCS 3216, pp. 111-118, in Saint-Malo, France, September 26-30, 2004 (pdf).

  21. D. L. Pham and P.-L. Bazin,"Simultaneous Boundary and Partial Volume Estimation in Medical Images", Proceedings of the 7th International Conference on Medical Image Computing and Computer Assisted Intervention, LNCS 3216, pp. 111-118, in Saint-Malo, France, September 26-30, 2004 (pdf).

  22. P.-L. Bazin and J. M. Vezien, "Motion curves for parametric shape and motion estimation", Proceedings of the European Conference on Computer Vision, LNCS 2351, pp. 262-276, in Copenhagen, Denmark, 2002 (pdf).
  23. P.-L. Bazin and J. M. Vezien, "Estimation séquentielle de la structure et du mouvement dans une approche par modèles", Actes du 13ème Congrès Francophone AFRIF-AFIA de Reconnaissance des Formes et Intelligence Artificielle, in Angers, France, January 8-10, 2002 (ps.gz).

  24. P.-L. Bazin, J. M. Vezien and A. Gagalowicz, "Shape and Motion Estimation from Geometric Primitives and Parametric Modelling", Proceedings of the IAPR Workshop on Machine Vision Applications, in Tokyo, Japan, November 28-30, 2000 (ps.gz).

  25. P.-L. Bazin and J. M. Vezien, "Tracking geometric primitives in video streams", Proceedings of IMVIP 2000, Irish Machine Vision and Image Processing Conference 2000, in Belfast, Northern Ireland, U.K., August 2000 (ps.gz).

  26. P.-L. Bazin, "A parametric scene reduction algorithm from geometric relations", Proceedings of SPIE vol. 4117, Vision Geometry IX, SPIE's 45th annual meeting, in San Diego, CA, July 2000 (ps.gz).

  27. P.-L. Bazin, P. Gerard and A. Gagalowicz, "Two computer vision-based tracking applications solved using a robust parallel optimizer", Proceedings of the 10th International Conference on Image Analysis and Processing (ICIAP 1999), in Venice, Italy, 27-29 September 1999. (ps.gz).

Abstracts

  1. N. Shiee, P-L. Bazin, D.S. Reich, D.L. Pham, "An Automated Pipeline for Cortical Reconstruction of Brains with MS", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009.

  2. J. Wan, A. Carass, P-L. Bazin, S.H. Ying, and J.L. Prince, "Automated Cerebellum Extraction From Whole Head 3D MR Images", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009.

  3. B.A. Landman, P-L. Bazin, and J.L. Prince, "Robust DTI Noise Level Estimation Improves RESTORE Tensor Estimation", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.
  4. B.A. Landman, P-L. Bazin, and J.L. Prince, "Robust Diffusion Tensor Estimation by Maximizing Rician Likelihood", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.

  5. H. Huang, P.-L. Bazin, K. Hua, J.L. Prince, P.C. van Zijl and S. Mori, "Probabilistic Gray and White Matter MRI Atlas of Humain Brain",  presented at the Annual Meeting of the International Society for Magnetic Resonance in Medicine, Berlin, Germany, May 2007.

  6. P.-L. Bazin, X. Han, D. Tosun, J.L. Prince, D.L. Pham, "Cortical Reconstruction using Topology Preserving Tissue Classification," presented at the 12th Annual Meeting of the Organization of Human Brain Mapping, in Florence, Italy, June 11-15, 2006.
  7. P.-L. Bazin, M. McAuliffe and D. L. Pham, "Free Software Tools for Structural Neuroimage Analysis", presented at the 11th Annual Meeting of the Organization of Human Brain Mapping, in Toronto, Canada, June 12-16, 2005.

  8. P.-L. Bazin and M. Boutin, "Structure from Motion using Invariants", Actas del Encuentro de Algebra Computacional y Aplicaciones (EACA 2002), september 2002.

Dissertations and Reports

  1. P.-L. Bazin, "Modélisation et estimation du mouvement et de la structure dans une séquence d'images à partir d'indices géométriques épars, avec application à la post-production audio-visuelle", PhD thesis, Université Paris XI, Orsay, 2001 (ps.gz).

  2. P.-L. Bazin and A. Henry, "WallDrawer: a Simple Solution to Traditional Drawing and Photographic Recording of Archaeological Features", SHAPE Laboratory report, Brown University, 2003 (pdf).
   
 



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