Publications/Image Processing and Analysis

Publications

Biological	Brain	Image Processing	Image-Guided	OCT
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Image Processing and Analysis

2013

M. Chen, A. Lang, E. Sotirchos, H.S. Ying, P.A. Calabresi, J.L. Prince, and A. Carass, "Deformable Registration of Macular OCT Using A-mode Scan Similarity", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
Z. Yang, J.A. Bogovic, A. Carass, M. Ye, P.C. Searson, and J.L. Prince, "Automatic Cell Segmentation in Fluorescence Images of Confluent Cell Monolayers Using Multi-object Geometric Deformable Model (MGDM)", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
A. Lang, A. Carass, E. Sotirchos, and J.L. Prince, "Segmentation of Retinal OCT Images using a Random Forest Classifier", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
J.A. Bogovic, J.L. Prince, and P.-L. Bazin, "A Multiple Object Geometric Deformable Model for Image Segmentation", Computer Vision and Image Understanding, 117(2):145-157, 2013. (doi) (PubMed)

2012

B.A. Landman, A.L. Asman, A.G. Scoggins, J.A. Bogovic, F. Xing, and J.L. Prince, "Robust Statistical Fusion of Image Labels", IEEE Trans. on Medical Imaging, 31(2):512-522, February 2012. (doi) (PubMed) (PMCID 3262958)
F. Xing, A.J. Asman, J.L. Prince, and B.A. Landman, "Finding Seeds for Segmentation Using Statistical Fusion", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (doi)
J. Woo, Y. Bai, S. Roy, E. Murano, M. Stone, and J.L. Prince, "Super-resolution reconstruction for tongue MR images", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (doi)
B.A. Landman, A.J. Asman, A.G. Scoggins, J.A. Bogovic, J.A. Stein, and J.L. Prince, "Foibles, follies, and fusion: Web-based collaboration for medical image labelling", NeuroImage, 59(1):530–539, January 2012. (doi) (PubMed)

2011

A.J. Asman, A.G. Scoggins, J.L. Prince, and B.A. Landman, "Foibles, Follies, and Fusion: Assessment of Statistical Label Fusion Techniques for Web-Based Collaborations using Minimal Training", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (doi) (PubMed) (PMCID 3083117)

2010

J.A. Bogovic, P.-L. Bazin, J.L. Prince, "Topology-Preserving STAPLE", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2010), San Francisco, California, June 14, 2010. (doi)
B.A. Landman, J.A. Bogovic, J.L. Prince, "Simultaneous Truth and Performance Level Estimation with Incomplete, Over-complete, and Ancillary Data", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi) (PubMed) (PMCID 2917119)
L.M. Ellingsen, G. Chintalapani, R.H. Taylor, and J.L. Prince, "Robust deformable image registration using prior shape information for atlas to patient registration", Comput. Med. Imaging Graph, 34(1):79-90, January 2010. (PubMed)

2009

K.R. Rocha, G. Sundaramoorthi, A.J. Yezzi, and J.L. Prince, "3D Topology Preserving Flows for Viewpoint-Based Cortical Unfolding", Int. J. Comput. Vis., 85(3):223-236, December 2009. (doi) (PubMed) (PMCID 2786089)
L.M. Ellingsen and J.L. Prince, "Mjolnir:Extending HAMMER Using a Diffusion Transformation Model and Histogram Equalization for Deformable Image Registration", Int. J. Biomed. Imaging, 2009:281615, August 2009. (doi) (PubMed) (PMCID 2724857)
X. Han, C. Xu, and J.L. Prince, "A Moving Grid Framework for Geometric Deformable Models", Int. J. Comput. Vis., 84(1):63-79, August 2009. (doi) (PubMed) (PMCID 2784682)
Y. Bai, X. Han, and J.L. Prince, "Digital Topology on Adaptive Octree Grids", J. Math Imaging Vis., 34(2):165-184, June 2009. (doi) (PubMed) (PMCID 2805029)

2008

X. Fan, P.-L. Bazin, J. Bogovic, Y. Bai, and J.L. Prince, "A multiple geometric deformable model framework for homeomorphic 3D medical image segmentation", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), Anchorage, Alaska, June 24-26, 2008. (doi)
X. Fan, P.-L. Bazin, and J.L. Prince, "A Multi-Compartment Segmentation Framework With Homeomorphic Level Sets.", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), Anchorage, Alaska, June 24-26, 2008. (PubMed)

2007

G. Chintalapani, L.M. Ellingsen, O. Sadowsky, J.L. Prince, and R.H. Taylor, "Statistical atlases of bone anatomy: construction, iterative improvement and validation", Tenth International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2007), Brisbane, Australia, October 29 - November 2, 2007. (doi) (PubMed)
P.-L. Bazin, L.M. Ellingsen, and D.L. Pham, "Digital homeomorphisms in deformable registration", 20^th Conference on Information Processing in Medical Imaging (IPMI 2007), Kerkrade, The Netherlands, July 2-6, 2007. (doi) (PubMed)
X. Han, C. Xu, and J.L. Prince, "Fast numerical scheme for gradient vector flow computation using a multigrid method", IET Image Processing, 1(1):48-55, March 2007. (doi)
K.R. Rocha, A.J. Yezzi, and J.L. Prince, "A Hybrid Eulerian–Lagrangian Approach for Thickness, Correspondence, and Gridding of Annular Tissues", IEEE Trans. on Image Processing, 16(3):636-648, March 2007. (doi)

2006

L. Ellingsen and J.L. Prince, "Mjolnir: Deformable image registration using feature diffusion", Proceedings of SPIE Medical Imaging (SPIE-MI 2006), San Diego, CA, 2006. (doi)

2003

X. Han, C. Xu, and J.L. Prince, "A 2D Moving Grid Geometric Deformable Model", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2003), Madison, Wisconsin, June 16-22, 2003.
A. Yezzi and J.L. Prince, "An Eulerian PDE approach for computing tissue thickness", IEEE Trans. on Medical Imaging, 22(10):1332–1339, October 2003. (doi) (PubMed)

2002

W.S. Kerwin and J.L. Prince, "Kriging Filters for Space Time Interpolation", Advances in Imaging and Electron Physics, 124:139-193, November 2002.
M. NessAiver and J.L. Prince, "Magnitude Image CSPAMM Reconstruction (MICSR) Improves Tag Contrast and Persistence", ESMRMB, Cannes, France, August 22-25 2002. (doi) (PubMed)
J.M. Links and J.L. Prince, "Restoration of Multi-collimator/Multi-head SPECT Data Via the Vector Wiener Filter", SNM 49th Annual Mtg., Los Angeles, California, June 16, 2002.
A. Yezzi and J.L. Prince, "A PDE Approach for Thickness, Correspondence, and Gridding of Annular Tissues", Proc. Europ. Conf. Comput. Vis. (ECCV), Copenhagen, Denmark, May 2002.

2001

A. Yezzi and J.L. Prince, "A PDE Approach for Measuring Tissue Thickness", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), Kauai, Hawaii, December 8-14, 2001. (doi)
D.L. Pham, "Spatial Models for Fuzzy Clustering", Computer Vision and Image Understanding, 84(2):285-297, 2001. (doi)
C. Xu, A. Yezzi, Jr., and J.L. Prince, "A Summary of Geometric Level-Set Analogues for a General Class of Parametric Active Contour and Surface Models", Proc. of 2001 IEEE Workshop on Variational and Level Set Methods in Computer Vision (VLSM 2001), 104-111, July 2001. (doi)

2000

N.F. Osman and J.L. Prince, "On the design of the bandpass filters in harmonic phase MRI", IEEE International Conference on Image Processing (ICIP 2000), Vancouver, Canada , September 10-13, 2000. (doi)
W.S. Kerwin and J.L. Prince, "On the Optimality of Recursive Unbiased State Estimation with Unknown Inputs", Automatica, 36(9):1381-1383, September 2000. (doi)
C. Tu, T.D. Tran, J.L. Prince, and P.N. Topiwala, "Projection-based block motion estimation for video coding", Proc. SPIE Applications of Digital Image Processing XXIII, San Diego, California, August 2000.
D. L. Pham and J. L. Prince, "Unsupervised partial volume estimation in single-channel image data", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2000), Hilton Head Island, South Carolina, June 11-12, 2000. (doi)
C. Xu, D.L. Pham, and J.L. Prince, "Medical Image Segmentation Using Deformable Models", SPIE Handbook on Medical Imaging -- Volume III: Medical Image Analysis, edited by J.M. Fitzpatrick and M. Sonka, May 2000.
D.L. Pham, C. Xu, and J.L. Prince, "Current Methods in Medical Image Segmentation", Annual Review of Biomedical Engineering, 2:315-338, 2000. (doi)
C. Xu, A. Yezzi, and J.L. Prince, "On the Relationship between Parametric and Geometric Active Contours", Proc. of 34th Asilomar Conference on Signals, Systems, and Computers,, 483-489, October 2000. (doi)
C. Xu and J.L. Prince, "Gradient Vector Flow Deformable Models", Handbook of Medical Imaging, edited by Isaac Bankman, Academic Press, September, 2000.
X. Han, M.E. Rettmann, C. Xu, and J.L. Prince, "Morphology on Triangle Meshes Using Geodesic Distance", Conference on Information Sciences and Systems (CISS 2000), Princeton, New Jersey, March 15-17, 2000.
C. Xu and J.L. Prince, "Global Optimality of Gradient Vector Flow", Conference on Information Sciences and Systems (CISS 2000), Princeton, New Jersey, March 15-17, 2000.

1999

D.L. Pham and J.L. Prince, "Adaptive Fuzzy Segmentation of Magnetic Resonance Images", IEEE Trans. on Medical Imaging, 18(9):737-752, September 1999. (doi) (PubMed)
W.S. Kerwin and J.L. Prince, "The Kriging Update Model and Recursive Space-Time Function Estimation", IEEE Trans. on Signal Processing, 47(11):2942-2952, November 1999. (doi)
D.L. Pham and J.L. Prince, "An Adaptive Fuzzy Segmentation Algorithm for Three-dimensional Magnetic Resonance Images", 16th Conference on Information Processing in Medical Imaging (IPMI 1999), Visegrád, Hungary, June 28 - July 2, 1999.
W.S. Kerwin and J.L. Prince, "On the Optimality of Recursive Unbiased State Estimation with Unknown Inputs", Conference on Information Sciences and Systems (CISS 1999), Baltimore, Maryland, March 17-19, 1999.
D.L. Pham and J.L. Prince, "A Generalized EM Algorithm for Robust Segmentation of Magnetic Resonance Images", Conference on Information Sciences and Systems (CISS 1999), Baltimore, Maryland, March 17-19, 1999.
C.A. Davatzikos and J.L. Prince, "Convexity Analysis of Active Contour Algorithms", Image and Vision Computing, 17(1):27-36, January 1999.

1998

N. Osman and J.L. Prince, "3-D Vector Tomography on Bounded Domains", Inverse Problems, 14:185-196, 1998.
C. Xu and J.L. Prince, "Generalized Gradient Vector Flow External Forces for Active Contours", Signal Processing, 71(2):131-139, December 1998.
D.L. Pham and J.L. Prince, "Partial Volume Estimation and the Fuzzy C-means Algorithm", IEEE International Conference on Image Processing (ICIP 1998), Chicago, Illinois, October 4-7, 1998. (doi)
J.L. Prince and C. Xu, "Nonconservative force models in active geometry", Proc. Image and Multidim. Dig. Sig. Proc., pg.139-142, Alpbach, Austria, July 1998.
W.S. Kerwin and J.L. Prince, "Recursive Filtering and Interpolation Algorithm for Function Sequences of Any Dimension", Proc. Image and Multidim. Dig. Sig. Proc, pg.239-242, Alpbach, Austria, July 1998.
C. Xu and J.L. Prince, "Snakes, shapes, and gradient vector flow", IEEE Trans. on Image Processing, 7(3):359-369, March 1998. (doi) (PubMed)
D.L. Pham and J.L. Prince, "Adaptive fuzzy c-means algorithm for image segmentation in the presence of intensity inhomogeneities", Proc. SPIE Vol.3338, Medical Imaging 1998: Image Processing, pg.555-563, San Diego, California, February 21-27, 1998.

1997

C. Xu and J.L. Prince, "Gradient Vector Flow: A New External Force for Snakes", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 1997), San Juan, Puerto Rico, June 17-19, 1997. (doi)
N.F. Osman and J.L. Prince, "Reconstruction of Vector Fields in Bounded Domain Vector Tomography", IEEE International Conference on Image Processing (ICIP 1997), Washington, District of Columbia, October 26-29, 1997. (doi)
N.F. Osman and J.L. Prince, "Reconstructed Potential Functions in Bounded Domain Vector Tomography", Conference on Information Sciences and Systems (CISS 1997), Baltimore, Maryland, March 19-21, 1997.

1996

J.M. Links, J.L. Prince, and S.N. Gupta, "A Vector Wiener Filter for Dual-Radionuclide Imaging", IEEE Trans. on Medical Imaging, 15(5):700-709, October 1996. (doi)
J.L. Prince, "Convolution Backprojection Formulas for 3-D Vector Tomography with Application to MRI", IEEE Trans. on Image Processing, 5(10):1462-1472, October 1996. (doi)
S.N. Gupta, and J.L. Prince, "On Div-Curl regularization for motion estimation in 3-D volumetric imaging", IEEE International Conference on Image Processing (ICIP 1996), Lausanne, Switzerland, September 16-19, 1996. (doi)
C.A. Davatzikos and J.L. Prince, "Convexity Analysis of Active Contour Problems", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 1996), San Francisco, California, June 18-20, 1996. (doi)
C.A. Davatzikos, J.L. Prince, and R.N. Bryan, "Image Registration Based on Boundary Mapping", IEEE Trans. on Medical Imaging, 15(1):112-115, February 1996. (doi)
S.N. Gupta, and J.L. Prince, "Stochastic Models for DIV-CURL Optical Flow Methods", IEEE Signal Processing Letters, 3(2):32-34, February 1996. (doi)

1995

S.N. Gupta and J.L. Prince, "Stochastic Formulations of Optical Flow Algorithms Under Variable Brightness Conditions", IEEE International Conference on Image Processing (ICIP 1995), Washington, District of Columbia, October 23-26, 1995. (doi)
J.L. Prince, Q. Tan, and D. Pham, "Optimization of MR pulse sequences for Bayesian image segmentation", Medical Physics, 22(10):1651-1656, October 1995. (PubMed)
T.S. Denney, Jr., and J.L. Prince, "A frequency domain performance analysis of Horn and Schunck's optical flow algorithm for deformable motion", IEEE Trans. on Image Processing, 4(9):1324-1328, September 1995. (doi)
J.L. Prince, "Tomographic Imaging of Vector Fields", Invited Paper, OSA Spring Topical Meetings, Signal Recovery and Synthesis V, pp. 2-4, March 12-17, 1995.
S. Gupta and J.L. Prince, "On Well-posed stochastic formulations of optical flow", Conference on Information Sciences and Systems (CISS 1995), Baltimore, Maryland, March 1995.

1994

J.L. Prince, "A Convolution Backprojection Formula for Three-Dimensional Vector Tomography", IEEE International Conference on Image Processing (ICIP 1994), Austin, Texas, November 13-16, 1994. (doi)
T.S. Denny Jr., J.L. Prince, M.J. Lopez, and E.R. McVeigh, "Optimal tag pattern validation using magnetic resonance imaging", IEEE International Conference on Image Processing (ICIP 1994), Austin, Texas, November 13-16, 1994. (doi)
J.L. Prince, "Tomographic Reconstruction of 3-D Vector Fields Using Inner Product Probes", IEEE Trans. on Image Processing, 3(2):216-219, March 1994. (doi)
T.S. Denney Jr. and J.L. Prince, "Optimal Brightness Functions for Optical Flow Estimation of Deformable Motion", IEEE Trans. on Image Processing, 3(2):178-191, March 1994. (doi)
T.S. Denney Jr. and J.L. Prince, "New Results on the Performance of Optical Flow for Deformable Motion", Conference on Information Sciences and Systems (CISS 1994), Princeton, New Jersey, March 1994.

1993

J.L. Prince and A.S. Wilsky, "Hierarchical reconstruction using geometry and sinogram restoration", IEEE Trans. on Image Processing, 2(3):401-416, July 1993. (doi)
C.A. Davatzikos and J.L. Prince, "Adaptive active contour algorithms for extracting and mapping thick curves", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 1993), New York, NY, June 15-17, 1993. (doi)
TS. Denny Jr. and J.L. Prince, "Optimal brightness patterns for 2-D optical flow", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1993), Minneapolis, Minnesota, April 27-30, 1993. (doi)
J.L. Prince, "Tomographic reconstruction of 3-D vector fields", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1993), Minneapolis, Minnesota, April 27-30, 1993. (doi)

1992

T.S. Denny Jr. and J.L. Prince, "On optimal brightness functions for optical flow", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1992), San Francisco, California, March 23-26, 1992. (doi)
C.A. Davatzikos and J.L. Prince, "Segmentation and mapping of highly convoluted contours with applications to medical images", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1992), San Francisco, California, March 23-26, 1992. (doi)

1991

J.L. Prince and E.R. McVeigh, "Optical flow for tagged MR images", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1991), Toronto, Canada, May 14-17, 1991. (doi)
C.A. Davatzikos and J.L. Prince, "Charting Thick Sheets In 3-D", Proceedings of the Seventh Workshop on Multidimensional Signal Processing, 1991.

1990

J.L. Prince, "Consistency and convexity in object reconstruction from projections", IEEE International Conference on Systems Engineering, pp. 543-546, 1990. (doi)
J.L. Prince and A.S. Willsky, "Reconstructing convex sets from support line measurements", IEEE Trans. on Pattern Analysis Machine Intelligence, 12(4):377-389, April 1990. (doi)
J.L. Prince, "An Iterative Approach To Sinogram Restoration", Proceedings of the Twelfth Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 366-367, November 1-4 1990.